Validate a Salmon Data Package end to end — validate_salmon

Reads a package from disk, checks that metadata/data files stay aligned, verifies coded values against codes.csv when present, and then runs validate_dictionary() plus validate_semantics(). This is the quickest pre-flight check before sharing a package-first submission.

Usage

validate_salmon_datapackage(path, require_iris = FALSE)

Arguments

path: Character; directory containing the Salmon Data Package.
require_iris: Logical; if TRUE, require non-empty semantic IRIs for measurement fields (term_iri, property_iri, entity_iri, and unit_iri).

Value

Invisibly returns a list with components:

package: loaded package list from read_salmon_datapackage().
semantic_validation: result from validate_semantics().
issues: package-structure issue tibble (empty when validation passes).

Examples

if (FALSE) { # \dontrun{
pkg_path <- create_sdp(
  mtcars,
  dataset_id = "demo-1",
  table_id = "counts",
  overwrite = TRUE
)
validate_salmon_datapackage(pkg_path, require_iris = FALSE)
} # }