Read a Salmon Data Package

Loads a Salmon Data Package from disk, reading datapackage.json and associated resource files, returning tibbles and metadata for analysis.

Usage

read_salmon_datapackage(path)

Arguments

path

Character; path to directory containing datapackage.json

Value

A list with components:

• dataset: Dataset metadata tibble

• tables: Table metadata tibble

• dictionary: Dictionary tibble (reconstructed from schema)

• codes: Codes tibble (if available)

• resources: Named list of data tibbles

Examples

if (FALSE) { # \dontrun{
# Read a package
pkg <- read_salmon_datapackage("path/to/package")
pkg$resources$main_table
} # }